Dr. Edyta Greer, Baruch College

Author: Jake Cohen (Page 3 of 3)

Blog Post 1

DUE Friday, September 28, by 5pm.

We would like you to compose an informal blog post of around 200 words addressing the following points. Please do not write this as a series of bulleted answers, rather, incorporate all the ideas into a coherent one or two paragraphs. We are asking you to reflect on some of the ideas that have come up during both your own Hot Topic research as well as listening to your classmates.

This assignment is graded on a “check” system: if you complete the assignment on time and put in the effort, you get full credit (2% of your total grade). Be sure to check the category “Blog Entry 1” or you will not receive credit.

Informal writing means you should still take the time to re-read your writing and check for clarity as well as errors. However, you should feel free to adopt a reflective, casual, exploratory tone in your entry. Assume that the general public is your audience.


  • If you had to author an article in the NY Times or a comparable periodical on a scientific paper, what elements would you be sure to include to make it appealing to a broader audience yet remain scientifically sound?
  • Other than simplifying scientific jargon (which we all see is an important function of these articles), what do you think makes for a good representation of scientific research in a popular media report?
  • Are there areas where you think authors need to improve when writing about science?
  • Was there anything in your own research, or in the presentations of your classmates, that struck you as interesting, innovative, controversial, or surprising? If so, what and why?

research question

Hi everyone,

Please use this form to submit your research question by Friday night. This is just a preliminary exercise – we are asking you to begin thinking about the types of questions that can be asked about some of the data that was collected, or some of the things you may have observed, while doing BioBlitz data collection. You do not have to ask a question that pertains to the data type you personally collected, it can regard any aspect of the flora and fauna that live in Inwood Hill Park.

Also, it’s important to remember that you will have access to other types of data as well, including not only BioBlitz data from other years, but also other data sets from NYC. You can explore all the NYC open data sets at nyc.gov/data. So your question can be answered either by examining this year’s data, or by looking at data comparisons or changes across different years or places.

If you have questions about this project at this stage, feel free to email Dr. Greer. If you have issues with the technology, you can ask me. Thanks.

-Jake

hot topic presentations tomorrow

Hello everyone,

It was great to see some of you today at BioBlitz, I hope that you all had some fun and enjoyed the gorgeous weather this weekend. More importantly, I hope that you can now get a feel for what it means to collect scientific data, and that while not always glamorous, scientific research often draws upon many hundreds of data points, of which you are a small part. Think about how the skills we’ve already discussed in class, and especially the science senses, figure into what you did this weekend.

I’ve gotten a couple questions about tomorrow’s Hot Topic presentations, so I just wanted to clarify a couple things:

  • Your presentation can take any form you like. In past years, students have used PowerPoint, Google Slides, or just talked their way through an expanded version of their ePortfolios post.
  • You should focus mainly on how well the popular media report represents the primary source scientific article. Some other things to keep in mind: who wrote the popular media report? What is their job? What other things do they usually write about? Are they a dedicated science reporter, do they have degrees in science, etc.? Does the popular report make a conclusion where there is only a suggestion or possibility in the primary article?

Finally, a couple points regarding your citations as listed on the blog posts:

  • MANY of you did not put the year immediately following the author. This is very important. Again, we are using Chicago Style with author-date format, which means that all references should begin with the author followed by the date. This will allow your readers to quickly find the correct reference when they encounter an [author] [date] parenthetical citation. What this looks like, for a NY Times article:
    • Chang, Kenneth. 2018. “Water Droplets Don’t Just Hover on a Hot Pan. They Roll.” New York Times, September 14, https://nyti.ms/2NbtIDz.
    • In my text, when referencing this article, I would write (Chang 2018) and it would be easy to find this in my list of references.
  • Do not just use the “Cite this article” or “download citation” or “cite” feature on many websites. While these will often include much of the information, the formatting might be wrong, or it might include unnecessary information such as the search engine or aggregator used (e.g. EBSCOHost or Elsevier, neither of which you need).
  • Please make sure that you’ve used a short link, preferably a permalink or DOI, for your articles. If you go to an article through a search engine or get referred there from another site, often the URL will contain a lot of characters that specify this. It makes the URL get very long and unwieldy, very fast. A lot of these include symbols such as = ? & and other similar one. If there is a DOI listed, use that. If not, look for a “sharing” link or a “Permalink” button and use that. This is what it looks like on the NY Times website, for example:

bioblitz reminder: wear pants and shoes!

Hi class,

A reminder that this weekend is BioBlitz – I hope that you’re excited to participate! Just a couple quick reminders:

  • WEAR LONG PANTS, SOCKS, AND SNEAKERS. This is very important. While it is forecast to be sunny and warm this weekend (mid-to-high 70s), you need to have long pants and closed-toed shoes appropriate for varied terrain, and comfortable, durable socks. There is a lot of poison ivy (which will not kill you, but will make you very uncomfortable) in the park. Layers are always a good call.
  • Be sure to wear your BioBlitz shirt.
  • Arrive early. You know the MTA, you know how lovely it can be at times. Plan for extra time, as Inwood Hill Park is on the northern tip of Manhattan. Also, be sure to get off at the Dyckman St. A train station, not any other part of the park.

If you have questions, please ask via email. I’ll be there Sunday, so if you’re on then, I’ll see you there.

-Jake

chicago manual of style electronic access

Hi everyone,

I called the Baruch library today and they told me that unfortunately, because of prohibitive costs and low usage, Baruch no longer gets an electronic version of the Chicago Manual of Style. However, the NYPL does offer electronic access to anyone with a valid NYPL card (you should all have one, even if you don’t live in NYC, and they are very easy to get at any branch). Here is the link for the NYPL record.

The Baruch library does have a print version in the non-circulating reference section, available at this call no.: Z253 .U69 2017 (Reference 2nd floor).

The basic information about Chicago style citation is available at the Purdue OWL site. However, remember that for reference lists when using Author-Date citations (as we are), the year comes directly after the authorsAdditionally, we are not requiring you to list the “Accessed” date for online articles or journal articles accessed online.

Literally any question about the minutiae of citation can be answered by looking through the Chicago Manual, so if you have a question that is not answered on the OWL site, use the NYPL’s electronic access to the full version or go to the Baruch library reference section to consult the print version. The 17th ed. is the most recent.

-Jake

sample hot topic post

Hi everyone,

I’ve had a few questions already about the “Hot Topic” assignment for Friday, so just to reiterate:

All you need to do for Friday is to create a post with the category “Hot Topic” that lists your two articles as bibliographic references and includes links. The links should be embedded into the references, in other words, don’t just copy and paste the URL into your post. Also, if there is an option to use a permalink, take advantage of that rather than copying the long URL in your browser address bar. The permalink is often listed under the “share” options.

Below I’ve created a sample Hot Topic post that shows you what yours should look like. Be careful note to just use the auto-generated “cite” feature on journals. Remember that our citation system for Chicago (author-date) always puts the year directly after the author. Additionally, if the text of the article is not available online or is behind a paywall, you should download the PDF of the article and use the “Add Media” feature, which I have done for the primary source article in the example below (it’s much better to copy the URL for the PDF after you upload it to the media library, rather than using the “Insert Into Post” feature).

As always, please email me and Dr. Greer with any questions.

-Jake


Ibogaine to Treat Addiction [this would be the title of my post]

Popular article:

Hannaford, Alex. 2017. “Dying to Get Clean: Is Ibogaine the Answer to Heroin Addiction?” The Guardian, December 10. https://www.theguardian.com/society/2017/dec/10/ibogaine-heroin-addiction-treatment-gabon-withdrawal-danger-death.

Primary source:

Koenig, Xaver, and Karlheinz Hilber. 2015. “The Anti-Addiction Drug Ibogaine and the Heart: A Delicate Relation.” Molecules 20: 2208-2228. DOI: 10.3390/molecules20022208.

 

Intro to Scientific Research

This tutorial is geared to the Hot Topic assignment, but you can apply these research methods to any research project. We will use the psychoactive plant Tabernanthe iboga, and the drug derived from it, Ibogaine, as examples throughout.


Start with the Baruch College Library website: http://www.baruch.cuny.edu/library/.

To begin, you have to “Define Your Search” by choosing which types of resources you will search. One useful resource is called “OneSearch,” which searches Baruch’s physical library as well as web resources.

OneSearch is a powerful search tool, but it has limitations. As this helpful site points out, OneSearch is great if you are just starting out on your research. However, it does not cover everything that you have access to as a researcher. After you’ve done some initial research, it is essential to go directly to the databases to search them.

Start with browsing by subject. Under science and technology, choose some of the databases from the relevant fields: biology, chemistry, and health.

Some tips on searching and Boolean operators:

  • Always choose the “advanced” search option if there is one. You can specify a date range, article type, and many other filters and limiting factors.
  • AND looks for results with both terms, which narrows search terms (gives you the middle of the Venn diagram).
  • NOT excludes this factor (you can minus sign in Google)
  • OR gives you results with either term (everything in the Venn diagram)
  • Use “quotes” to get exact phrasing.
  • Add an asterisk for truncation:  Biolog* (biology, biological, biologist, etc)
  • Add new fields in the Search to narrow results: Title, author, publication date, # pages, publication, abstract, etc.

In addition to the science searches, you should also consider general search databases such as Academic Search Complete or MasterFILE. These are listed alphabetically under “Databases.”

screenshot-2016-09-20-23-46-58

Important Considerations

ALWAYS ask yourself the following questions when looking up research:

  1. Who is the author(s)? What is their job, who are they affiliated with?
  2. Is the journal a peer-reviewed journal? If you’re not sure, google it (many journals in the academic databases are peer-reviewed, but not all).
  3. When was the article published? Is the information obsolete? Is there more recent research that might invalidate it?

Abstracts

An abstract can help you determine if the article you’ve found is worth reading. A good abstract should provide:

  1. The problem or question to be addressed
  2. The motivation or purpose of the study
  3. The methodology used
  4. The results of the study
  5. The implications of those results

Try typing your organism species name into the search field in an academic search engine like MEDLINE or Academic Search Complete.

screenshot-2016-09-21-00-52-25

Read through some abstracts and determine if an article is worth keeping. Download the article and note its provenance. Use a note-taking program like Evernote, or keep a running Word document going, to keep track of bibliographic information. It can be very easy to take notes from an article and forget to attribute the source, which can lead to plagiarism.

screenshot-2016-09-21-00-57-24


Google Scholar

Google has a scholarly search engine called Google Scholar, which can be another powerful and useful research tool. Access Google Scholar through the Baruch databases list so that you will have access to full-text articles, then type your organism name into the search field. You can also select the triangle at the end of the search field for an advanced search.

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Google scholar has some very helpful tools. One is “Cited by…” Google will tell you how many other articles it has found that have cited this article.

screenshot-2016-09-21-01-14-01

Click on this link, and then you can search within those results by checking the box marked “Search within citing articles.” This will narrow the results.

Clicking on the article title might take you to a paywall. You can avoid this by clicking the bracketed link on the right, which might provide you with a PDF or a website where the article has been copied. If you can access the article through Baruch, there will be a link for that too.

screenshot-2016-09-21-01-22-28

“Related articles” is another very useful tool in Google Scholar.


Popular Sources

When searching for popular articles, always remember the “Important considerations” from above:

  1. Who is the author(s)? What is their job, who are they affiliated with?
  2. What is the publication?
  3. When was the article published?

In addition, you should do the following for websites:

  1. Find the “About us” or “About” page for a publication. This might be at the footer or in a top menu.
  2. Look at the author of a post and see what else they have written. If their output is on a diverse set of topics, they are likely not a scientific expert.

In addition to google, OneSearch is a great way to find these kinds of articles. Once you have results, filter by “Newspaper Articles.” You can also search by “Journal Title” and see a list of all journal titles. screenshot-2016-09-21-01-44-58

One final place to look for good articles in popular journals is using the News databases through Baruch’s website. Go back to “Databases,” then browse by subject and select “News.”

screenshot-2016-09-21-01-51-31

From here, you have a range of useful databases. Two that you should absolutely use are “Popular Magazines” and “LexisNexis Academic,” which is for newspapers. When searching in popular journals, you might have better luck using the common name for the plant/drug.

Wikipedia and Google

Wikipedia and Google (regular) can be useful search engines too, but you need to be extra careful when vetting sources. You no longer have an academic filter for your search, it’s just you vs. the internet!

But, you cannot cite a wikipedia page! You can cite sources that you found through a wikipedia page, but the page itself is not a valid scholarly source.

On a wiki page, first scan the page and see if it looks like considerable work has been put into the page. View the history of edits in the upper right to see how many people have worked on it, and scan their comments for evidence of scholarly rigor.

screenshot-2016-09-21-01-26-03

Next, go back to the main page and look through the references at the bottom. This can give you decent information of where the authors may have gotten their information. Determine if these seem legitimate by clicking through.

screenshot-2016-09-21-01-28-41

class tomorrow – bring your laptops

Hello everyone,

Tomorrow we will be doing an in-class workshop on research, sources, and citations, and this will involve some in-class research activities. Please make sure you bring your laptops, and be sure they are charged enough to last through class without plugging in. Thanks, see you tomorrow!

-Jake

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